PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 511aa    MW: 57922.7 Da    PI: 5.4799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.62.2e-1031325103374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Lle  +a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + +  f+evsP+ +f+h++
  XP_009804718.1 132 DILLETSRAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQALFSRMTDSGERCYRTLVSASDKTCSFESTRKLVLKFQEVSPWTTFGHVA 226
                     6799**********************************************************8888876555555455555************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rl 186
                      N aI+ea+eg++++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+   ++      ++ ++e+g+r++kfA+ +gvpf+f+v+++  +l
  XP_009804718.1 227 SNGAIMEAFEGDSKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVGGATggtaaVQKVMKEIGSRMEKFARLMGVPFKFSVIHHMgNL 321
                     ************************************************9998666678999999************************96656** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpr 277
                     ++l++ +L++k++Eala+n++ +lh++     +  ++rd +++l+k+l+P++v++ve+ead++ +    +F+++f e+l++  + f+sl++++p+
  XP_009804718.1 322 SELDVGALDIKEDEALAINCIGALHSVS----PAGNRRDYLISLFKRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLRWIRVYFESLDESFPK 412
                     ***************************8....777889*********************99865556669************************* PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369
                     +s+er ++Er+  gr+iv+++ac  +e+ er+et +kW +rl++ GF+p+ +s+++ +++++llr++k +g+++     +s+ ++l Wk++p+v+
  XP_009804718.1 413 TSNERLMLERQ-AGRSIVDLLACPPSESMERRETGAKWLHRLHAGGFSPILYSDEVCDDVRALLRRYK-EGWSMTqcgGDSAGIFLSWKEQPVVW 505
                     ***********.********************************************************.7766663446799999********** PP

            GRAS 370 vSaWr 374
                     +SaW+
  XP_009804718.1 506 ASAWK 510
                     ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.862104488IPR005202Transcription factor GRAS
PfamPF035147.7E-101132510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDTLFRLVTL QQQQQQSDQS FNSSRTSSSS RSSNKQNTYS TYNYPHHNQE DEECFNFFMD  60
EDDFSSNSSS KHNNYPPPYH YQQQQQQFSN TPTPTTTSST PTQSHQYYDQ FSPARDLNLE  120
FGSSFSGKWA TDILLETSRA IADKNSTRVQ QLMWMLNELS SPYGDTEQKL ASYFLQALFS  180
RMTDSGERCY RTLVSASDKT CSFESTRKLV LKFQEVSPWT TFGHVASNGA IMEAFEGDSK  240
LHIIDISNTY CTQWPTLLEA LATRTDETPH LRLTTVVVGG ATGGTAAVQK VMKEIGSRME  300
KFARLMGVPF KFSVIHHMGN LSELDVGALD IKEDEALAIN CIGALHSVSP AGNRRDYLIS  360
LFKRLQPRIV TIVEEEADLD VGVDGFDFVK GFQECLRWIR VYFESLDESF PKTSNERLML  420
ERQAGRSIVD LLACPPSESM ERRETGAKWL HRLHAGGFSP ILYSDEVCDD VRALLRRYKE  480
GWSMTQCGGD SAGIFLSWKE QPVVWASAWK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-311345108375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804718.10.0PREDICTED: protein SHORT-ROOT
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLK4BD330.0K4BD33_SOLLC; Uncharacterized protein
STRINGSolyc02g092370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20312464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein